PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01073.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 213aa    MW: 22645.1 Da    PI: 9.6209
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01073.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.7e-372484262
                   zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk  k+s
  Rsa1.0_01073.1_g00004.1 24 QQEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKTSKRS 84
                             57899***************************************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-34282IPR003851Zinc finger, Dof-type
PfamPF027011.2E-322682IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6862882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPSDFNESRR LTTKVPHGGA VADQQEQLPC PRCNSTNTKF CYYNNYNFSQ PRHFCKSCRR  60
YWTHGGTLRD IPVGGVSRKT SKRSRAFSSS VAVGSRSFPL QATPVLLPPP SSYGGGGKGN  120
PSSLYGGFTT LLSNNNATTA SRHGPGGGFN GLEGFGLGLG HGGYFDGQGI TFWPFSTGAS  180
DAATSHAAPV VHTTWQLEGL ENKVGFVAGD YLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112344.11e-113PREDICTED: dof zinc finger protein DOF5.8
SwissprotQ9FGD69e-95DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLM4F7S41e-113M4F7S4_BRARP; Uncharacterized protein
STRINGBra037135.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.17e-58Dof family protein